BioLiP
bioinformatics chemistry life sciences molecular docking molecule protein structural biology
Description
BioLiP is a semi-manually curated database for high-quality, biologically relevant ligand-protein binding interactions. The structure data are collected primarily from the Protein Data Bank (PDB), with biological insights mined from literature and other specific databases. BioLiP aims to construct the most comprehensive and accurate database for serving the needs of ligand-protein docking, virtual ligand screening and protein function annotation.
Update Frequency
No regular schedule; updated upon availability of major dataset revisions
License
No explicit license stated (publicly available for academic and research use).
Documentation
Managed By
See all datasets managed by Zhang Lab.
Contact
How to Cite
BioLiP was accessed on DATE from https://registry.opendata.aws/biolip. Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
Usage Examples
Tutorials
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BioLiP API usage by Zhang Lab
Publications
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BioLiP2: an updated structure database for biologically relevant ligand-protein interactions by Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang
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BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions by Jianyi Yang, Ambrish Roy, and Yang Zhang
Resources on AWS
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- Description
- BioLiP dataset
- Resource type
- S3 Bucket
- Amazon Resource Name (ARN)
arn:aws:s3:::biolip- AWS Region
ap-southeast-1- AWS CLI Access (No AWS account required)
aws s3 ls --no-sign-request s3://biolip/
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- Description
- BioLiP interaction structures
- Resource type
- S3 Bucket
- Amazon Resource Name (ARN)
arn:aws:s3:::biolip/weekly- AWS Region
ap-southeast-1- AWS CLI Access (No AWS account required)
aws s3 ls --no-sign-request s3://biolip/weekly/