DeepDrug Protein Embeddings Bank (DPEB)

Description

DPEB is a multimodal database of human protein embeddings integrating four biologically complementary representations—AlphaFold2, BioEmbeddings, ESM-2, and ProtVec—designed for enhanced protein-protein interaction prediction and functional classification.

Update Frequency

Initial release; maintained for at least 2 years with updates planned based on new embedding models and protein coverage.

License

MIT

Documentation

https://github.com/deepdrugai/DPEB

Managed By

Louisiana State University

See all datasets managed by Louisiana State University.

Contact

https://github.com/deepdrugai/DPEB/issues

How to Cite

DeepDrug Protein Embeddings Bank (DPEB) was accessed on DATE from https://registry.opendata.aws/deepdrug-dpeb. Sajol MSI et al. DeepDrug Protein Embeddings Bank (DPEB) was accessed on [DATE] at https://registry.opendata.aws/dpeb

Usage Examples

Tutorials

• Aggregating and Clustering AlphaFold2 Embeddings from DPEB by Md. Saiful Islam Sajol
  

Tools & Applications

• DPEB Explorer Tool by DeepDrug Lab
  

Publications

• A Multimodal Human Protein Embeddings Database - DeepDrug Protein Embeddings Bank (DPEB) by Sajol MSI, Rajasekaran M, Bess A, Alvin C, Mukhopadhyay S