RNA structure by fragmentation frequency

Description

The fragSTRUC project devises a software to extract RNA secondary structure information from Illumina datasets, based on divalent ions in standard RNA-seq library preparation fragmenting sequences at non-base-paired regions of RNA.

Update Frequency

Datasets will be updated periodically as additional data is generated.

License

CC BY 4.0

Documentation

https://github.com/yuukiiwa/RNA_structure_by_fragmentation_frequency

Managed By

The Genome Institute of Singapore (https://www.a-star.edu.sg/gis) and UMass Chan Medical School's RNA Therapeutics Institute (https://www.umassmed.edu/rti/)

See all datasets managed by The Genome Institute of Singapore (https://www.a-star.edu.sg/gis) and UMass Chan Medical School's RNA Therapeutics Institute (https://www.umassmed.edu/rti/).

Contact

fragSTRUC team

How to Cite

RNA structure by fragmentation frequency was accessed on DATE from https://registry.opendata.aws/frag-struc. In addition, please cite Yuk Kei Wan and Leonard Schärfen Hidden structural information in RNA sequencing data.

Usage Examples

Tutorials

• Accessing the fragSTRUC dataset on AWS by Yuk Kei Wan and Leonard Schärfen
  

Tools & Applications

• fragSTRUC: RNA structure by fragmentation frequency by Yuk Kei Wan and Leonard Schärfen