genetic genomic life sciences sqlite tertiary analysis variant annotation
OpenCRAVAT is a module variant annotation tool developed by KarchinLab at Johns Hopkins. This dataset is a mirror of the OpenCRAVAT store available at https://store.opencravat.org. You can configure OpenCRAVAT to use this mirror by editing the "cravat-system.yml" file. The path to this file is in the first output line of the command "oc config system". In that file, change the value of "store_url" to "https://opencravat-store-aws.s3.amazonaws.com".
Data is mirrored daily. Update frequencies of individual annotators depend on the update schedule of the source data.
License varies per-annotator. Commercial users must check the "commercial_warning" field in the module_name.yml file of each annotator.
https://open-cravat.readthedocs.io
KarchinLab, Potomac IT Group
See all datasets managed by KarchinLab, Potomac IT Group.
OpenCRAVAT was accessed on DATE from https://registry.opendata.aws/open-cravat. Pagel KA, Kim R, Moad K, Busby B, Zheng L, Tokheim C, Ryan M, Karchin R. (2020) Integrated informatics analysis of cancer-related variants. JCO CCI Mar;4:310-317. doi: 10.1200/CCI.19.00132.
arn:aws:s3:::opencravat-store-awsus-east-1aws s3 ls --no-sign-request s3://opencravat-store-aws/arn:aws:s3:::opencravat-store-eu-west-2eu-west-2aws s3 ls --no-sign-request s3://opencravat-store-eu-west-2/