SocialGene RefSeq Databases

Description

Precomputed SocialGene Neo4j graph databases of various sizes built from RefSeq genomes and MIBiG BGCs.

Update Frequency

This database is currently what was published in our 2024 paper introducing SocialGene, but an updated database may be added in the future.

License

Where applicable, SocialGene data is released under CC0 (https://creativecommons.org/public-domain/cc0/), some individual components of the database may have their own license (see https://socialgene.github.io/precomputed_databases/2023_v0.4.1/general)

Documentation

https://socialgene.github.io/precomputed_databases/2023_v0.4.1/aws/aws

Managed By

University of Wisconsin-Madison

See all datasets managed by University of Wisconsin-Madison.

Contact

https://github.com/socialgene/socialgene.github.io/issues

How to Cite

SocialGene RefSeq Databases was accessed on DATE from https://registry.opendata.aws/socialgene. C. M. Clark, J. C. Kwan, Creating and leveraging bespoke large-scale knowledge graphs for comparative genomics and multi-omics drug discovery with SocialGene. bioRxivorg, www.biorxiv.org/content/10.1101/2024.08.16.608329v1 (2024).

Usage Examples

Tutorials

• How to use SocialGene on AWS by Chase M. Clark
  Amazon EC2

Tools & Applications

• socialgene on pypi.python.org - python module for creating and interacting with SocialGene Neo4j databases by Chase M. Clark
  

Publications

• Creating and leveraging bespoke large-scale knowledge graphs for comparative genomics and multi-omics drug discovery with SocialGene. by C. M. Clark, J. C. Kwan